The cytotoxicity assessment of nanomaterials has become a global concern for diverse disciplines, including
agriculture. This study explored the physiological and molecular responses of pepper seedlings to the foliar
application of copper nanoparticles (CuNPs; 50, 100, and 200 mg L???? 1) compared to the bulk control. The CuNPs
treatment at 50 mg L???? 1 increased the shoot biomass by 20%, whereas the treatments at concentrations above
100 mg L???? 1 adversely influenced biomass (25%), chlorophyll content (21%), and starch concentration (23%).
Moreover, the CuNPs treatments at the toxic doses increased H2O2 concentration (60%) and lipid peroxidation
levels (27%), implying oxidative stress and potentially impaired membrane integrity. However, the phytotoxicity
risk associated with the CuNPs application was lower than the bulk control. The CuNPs treatments upregulated
the activities of catalase (2-folds), peroxidase (85%), and polyphenol oxidase (70%). The toxic doses of CuNPs
increased the protease activity by 16%. The Cu supplementation influenced the transcription of microRNA159
(miR159) and Mevalonate kinase (MVK) genes in concentration and material type-dependent manners. Toxic
concentrations of CuNP transcriptionally upregulated miR159 by approximately 2-folds. The expression of the
MVK gene displayed a downregulation trend (5-folds) in response to the bulk Cu, while the CuNPs treatments
slightly downregulated this gene. With increasing the concentration of CuNPs, the accumulations of protein and
non-protein thiols displayed an increasing trend by approximately 45%. The CuNPs-treated plants contained a
higher concentration of proline (59%) and phenols (34%). This study underlines the potential cytotoxicity risk
associated with the application of CuNPs as a fertilizer or pesticide in agriculture-related industries.